| Protein ZmOrphan176 | |
|---|---|
|
ZmOrphan176 is a protein in the Orphans family.
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| Information | |
| Orphans Name: | ZmOrphan176 |
| Species: | Maize |
| Orphans Family: | Orphans |
| Gene Name(Synonym): | |
| Uniprot ID: | K7VHF5 |
| Subgenome: | 2 |
Protein ZmOrphan176
ZmOrphan176 is a protein in the Orphans family.
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d048352 | DAPseq |  |
sequence | fimo | position |
| Zm00001d048352 | DAPseq |  |
sequence | fimo | position |
| Zm00001d048352 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d048352 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmOrphan176 is the regulator
Interactions where ZmOrphan176 is the target
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Zm00001d048352_T001 from maize genome v4
Amino Acid Sequence
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MVRARGLFCLVSPVRGDPADRRSSAACICCVGPHHKPSSGAPDADLSARLPLTGCCGADVRGRSSAARTPRTPCTPTARR
LCGVRPRTPRRGQVCCFPAATVEPAGPEAAAAVARTPRTPTTQAQQGPGWRRRWLFRSARQAAAQMTPRFRGAGRDSAHA
GNNNTSAYDARLPEAEAETETCSNDEYALLCREGFSREDVAAVTIQAYFRGHLARRAFMALKSLVRLQAVARGAFVRRQA
EVAMQCMQAMARLHGRVRARRMLTTKPEAEQLLQS
MVRARGLFCLVSPVRGDPADRRSSAACICCVGPHHKPSSGAPDADLSARLPLTGCCGADVRGRSSAARTPRTPCTPTARR
LCGVRPRTPRRGQVCCFPAATVEPAGPEAAAAVARTPRTPTTQAQQGPGWRRRWLFRSARQAAAQMTPRFRGAGRDSAHA
GNNNTSAYDARLPEAEAETETCSNDEYALLCREGFSREDVAAVTIQAYFRGHLARRAFMALKSLVRLQAVARGAFVRRQA
EVAMQCMQAMARLHGRVRARRMLTTKPEAEQLLQS
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
Nucleotide Sequence
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ATGGTGAGAGCAAGGGGCTTGTTCT...
ATGGTGAGAGCAAGGGGCTTGTTCTGCCTCGTGTCGCCGGTCCGCGGCGACCCCGCCGACCGCCGCAGCAGCGCCGCGTGCATATGCTGCGTGGGCCCTCACCACAAGCCGTCGTCCGGCGCTCCCGACGCCGACCTGAGCGCGAGGCTGCCGCTCACCGGGTGCTGCGGCGCGGACGTCCGCGGCCGGAGCAGCGCCGCGCGCACCCCGAGGACGCCGTGCACGCCCACCGCCAGGCGCCTCTGCGGCGTCCGCCCTCGCACGCCGCGCCGCGGGCAGGTCTGCTGCTTCCCTGCCGCCACCGTCGAGCCGGCAGGACCGGAGGCCGCCGCCGCCGTCGCGAGGACGCCGCGAACCCCTACCACGCAGGCGCAGCAGGGCCCGGGCTGGCGGCGCCGTTGGTTGTTCCGCTCCGCTCGCCAGGCGGCGGCGCAGATGACGCCGCGCTTTCGGGGCGCCGGCCGCGACAGCGCCCACGCTGGCAACAACAACACAAGTGCCTACGACGCGCGCCTCCCGGAGGCGGAGGCGGAGACGGAGACGTGCTCCAACGACGAGTATGCGCTGCTCTGCAGGGAGGGCTTCTCCCGGGAGGACGTGGCCGCGGTCACCATCCAGGCCTACTTCCGAGGCCACCTGGCGCGGCGGGCGTTCATGGCGCTCAAGAGCCTGGTGAGGCTTCAGGCGGTGGCGCGGGGCGCGTTCGTGCGGCGCCAGGCGGAGGTGGCCATGCAATGCATGCAGGCGATGGCGCGGCTGCATGGGCGCGTGCGCGCCCGGCGGATGCTGACCACCAAACCCGAGGCCGAGCAGCTGTTGCAGAGCTGACCGGAGGCTGCATTCTCGATCGGCAAAGAAGAGTCCACCGCACGAATAAGGTGAACGTGCTGTTTGTGAGAGGCATTTGTTCTTTTGACTGATGAACTTTGCCAGGGCCTCACGACTGTAATGTCCCTGTAATTCGCCTTCATTTCTTTCTCTCTTTTTGGCTGTGCTGTGGCAATATGTAACTGTTGCATTTTGTAAGCGTTGGTTTGATTTGAGACTTTCGAATTTTGATCATGGAAAACAGAAAGATAAAAAATTATCAAGGC
GRMZM2G126802_T01 from maize genome v3
Amino Acid Sequence
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MVRARGLFCLVSPVRGDPADRRSSAACICCVGPHHKPSSGAPDADLSARLPLTGCCGADVRGRSSAARTPRTPCTPTARR
LCGVRPRTPRRGQVCCFPAATVEPAGPEAAAAVARTPRTPTTQAQQGPGWRRRWLFRSARQAAAQMTPRFRGAGRDSAHA
GNNNTSAYDARLPEAEAETETCSNDEYALLCREGFSREDVAAVTIQAYFRGHLARRAFMALKSLVRLQAVARGAFVRRQA
EVAMQCMQAMARLHGRVRARRMLTTKPEAEQLLQS
Nucleotide Sequence
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GCAAAGAGCCAAAGACACCTGCCAT...
GCAAAGAGCCAAAGACACCTGCCATGGTGAGAGCAAGGGGCTTGTTCTGCCTCGTGTCGCCGGTCCGCGGCGACCCCGCCGACCGCCGCAGCAGCGCCGCGTGCATATGCTGCGTGGGCCCTCACCACAAGCCGTCGTCCGGCGCTCCCGACGCCGACCTGAGCGCGAGGCTGCCGCTCACCGGGTGCTGCGGCGCGGACGTCCGCGGCCGGAGCAGCGCCGCGCGCACCCCGAGGACGCCGTGCACGCCCACCGCCAGGCGCCTCTGCGGCGTCCGCCCTCGCACGCCGCGCCGCGGGCAGGTCTGCTGCTTCCCTGCCGCCACCGTCGAGCCGGCAGGACCGGAGGCCGCCGCCGCCGTCGCGAGGACGCCGCGAACCCCTACCACGCAGGCGCAGCAGGGCCCGGGCTGGCGGCGCCGTTGGTTGTTCCGCTCCGCTCGCCAGGCGGCGGCGCAGATGACGCCGCGCTTTCGGGGCGCCGGCCGCGACAGCGCCCACGCTGGCAACAACAACACAAGTGCCTACGACGCGCGCCTCCCGGAGGCGGAGGCGGAGACGGAGACGTGCTCCAACGACGAGTATGCGCTGCTCTGCAGGGAGGGCTTCTCCCGGGAGGACGTGGCCGCGGTCACCATCCAGGCCTACTTCCGAGGCCACCTGGCGCGGCGGGCGTTCATGGCGCTCAAGAGCCTGGTGAGGCTTCAGGCGGTGGCGCGGGGCGCGTTCGTGCGGCGCCAGGCGGAGGTGGCCATGCAATGCATGCAGGCGATGGCGCGGCTGCATGGGCGCGTGCGCGCCCGGCGGATGCTGACCACCAAACCCGAGGCCGAGCAGCTGTTGCAGAGCTGA
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